The number of international benchmarking competitions is steadily increasing in various fields of machine learning (ML) research and practice. So far, however, little is known about the common practice as well as bottlenecks faced by the community in tackling the research questions posed. To shed light on the status quo of algorithm development in the specific field of biomedical imaging analysis, we designed an international survey that was issued to all participants of challenges conducted in conjunction with the IEEE ISBI 2021 and MICCAI 2021 conferences (80 competitions in total). The survey covered participants' expertise and working environments, their chosen strategies, as well as algorithm characteristics. A median of 72% challenge participants took part in the survey. According to our results, knowledge exchange was the primary incentive (70%) for participation, while the reception of prize money played only a minor role (16%). While a median of 80 working hours was spent on method development, a large portion of participants stated that they did not have enough time for method development (32%). 25% perceived the infrastructure to be a bottleneck. Overall, 94% of all solutions were deep learning-based. Of these, 84% were based on standard architectures. 43% of the respondents reported that the data samples (e.g., images) were too large to be processed at once. This was most commonly addressed by patch-based training (69%), downsampling (37%), and solving 3D analysis tasks as a series of 2D tasks. K-fold cross-validation on the training set was performed by only 37% of the participants and only 50% of the participants performed ensembling based on multiple identical models (61%) or heterogeneous models (39%). 48% of the respondents applied postprocessing steps.

我们分享了我们最近的发现，以试图培训通用分割网络的各种细胞类型和成像方式。我们的方法建立在广义的U-NET体系结构上，该体系结构允许单独评估每个组件。我们修改了传统的二进制培训目标，以包括三个类以进行直接实例细分。进行了有关培训方案，培训设置，网络骨架和各个模块的详细实验。我们提出的培训方案依次从每个数据集中吸取小匹配，并且在优化步骤之前积累了梯度。我们发现，培训通用网络的关键是所有数据集上的历史监督，并且有必要以公正的方式对每个数据集进行采样。我们的实验还表明，可能存在共同的特征来定义细胞类型和成像方式的细胞边界，这可以允许应用训练有素的模型完全看不见的数据集。一些培训技巧可以进一步提高细分性能，包括交叉渗透损失功能中的班级权重，精心设计的学习率调度程序，较大的图像作物以进行上下文信息以及不平衡类别的其他损失条款。我们还发现，由于它们更可靠的统计估计和更高的语义理解，分割性能可以受益于组规范化层和缺陷的空间金字塔池模块。我们参与了在IEEE国际生物医学成像研讨会（ISBI）2021举行的第六个细胞跟踪挑战（CTC）。我们的方法被评估为在主要曲目的初始提交期间，作为最佳亚军，并在额外的竞争中获得了第三名，以准备摘要出版物。

Blind image quality assessment (BIQA) remains challenging due to the diversity of distortion and image content variation, which complicate the distortion patterns crossing different scales and aggravate the difficulty of the regression problem for BIQA. However, existing BIQA methods often fail to consider multi-scale distortion patterns and image content, and little research has been done on learning strategies to make the regression model produce better performance. In this paper, we propose a simple yet effective Progressive Multi-Task Image Quality Assessment (PMT-IQA) model, which contains a multi-scale feature extraction module (MS) and a progressive multi-task learning module (PMT), to help the model learn complex distortion patterns and better optimize the regression issue to align with the law of human learning process from easy to hard. To verify the effectiveness of the proposed PMT-IQA model, we conduct experiments on four widely used public datasets, and the experimental results indicate that the performance of PMT-IQA is superior to the comparison approaches, and both MS and PMT modules improve the model's performance.

It has been observed in practice that applying pruning-at-initialization methods to neural networks and training the sparsified networks can not only retain the testing performance of the original dense models, but also sometimes even slightly boost the generalization performance. Theoretical understanding for such experimental observations are yet to be developed. This work makes the first attempt to study how different pruning fractions affect the model's gradient descent dynamics and generalization. Specifically, this work considers a classification task for overparameterized two-layer neural networks, where the network is randomly pruned according to different rates at the initialization. It is shown that as long as the pruning fraction is below a certain threshold, gradient descent can drive the training loss toward zero and the network exhibits good generalization performance. More surprisingly, the generalization bound gets better as the pruning fraction gets larger. To complement this positive result, this work further shows a negative result: there exists a large pruning fraction such that while gradient descent is still able to drive the training loss toward zero (by memorizing noise), the generalization performance is no better than random guessing. This further suggests that pruning can change the feature learning process, which leads to the performance drop of the pruned neural network. Up to our knowledge, this is the \textbf{first} generalization result for pruned neural networks, suggesting that pruning can improve the neural network's generalization.

Time-series anomaly detection is an important task and has been widely applied in the industry. Since manual data annotation is expensive and inefficient, most applications adopt unsupervised anomaly detection methods, but the results are usually sub-optimal and unsatisfactory to end customers. Weak supervision is a promising paradigm for obtaining considerable labels in a low-cost way, which enables the customers to label data by writing heuristic rules rather than annotating each instance individually. However, in the time-series domain, it is hard for people to write reasonable labeling functions as the time-series data is numerically continuous and difficult to be understood. In this paper, we propose a Label-Efficient Interactive Time-Series Anomaly Detection (LEIAD) system, which enables a user to improve the results of unsupervised anomaly detection by performing only a small amount of interactions with the system. To achieve this goal, the system integrates weak supervision and active learning collaboratively while generating labeling functions automatically using only a few labeled data. All of these techniques are complementary and can promote each other in a reinforced manner. We conduct experiments on three time-series anomaly detection datasets, demonstrating that the proposed system is superior to existing solutions in both weak supervision and active learning areas. Also, the system has been tested in a real scenario in industry to show its practicality.

As an important variant of entity alignment (EA), multi-modal entity alignment (MMEA) aims to discover identical entities across different knowledge graphs (KGs) with multiple modalities like images. However, current MMEA algorithms all adopt KG-level modality fusion strategies but ignore modality differences among individual entities, hurting the robustness to potential noise involved in modalities (e.g., unidentifiable images and relations). In this paper we present MEAformer, a multi-modal entity alignment transformer approach for meta modality hybrid, to dynamically predict the mutual correlation coefficients among modalities for instance-level feature fusion. A modal-aware hard entity replay strategy is also proposed for addressing vague entity details. Extensive experimental results show that our model not only achieves SOTA performance on multiple training scenarios including supervised, unsupervised, iterative, and low resource, but also has limited parameters, optimistic speed, and good interpretability. Our code will be available soon.

The task of video prediction and generation is known to be notoriously difficult, with the research in this area largely limited to short-term predictions. Though plagued with noise and stochasticity, videos consist of features that are organised in a spatiotemporal hierarchy, different features possessing different temporal dynamics. In this paper, we introduce Dynamic Latent Hierarchy (DLH) -- a deep hierarchical latent model that represents videos as a hierarchy of latent states that evolve over separate and fluid timescales. Each latent state is a mixture distribution with two components, representing the immediate past and the predicted future, causing the model to learn transitions only between sufficiently dissimilar states, while clustering temporally persistent states closer together. Using this unique property, DLH naturally discovers the spatiotemporal structure of a dataset and learns disentangled representations across its hierarchy. We hypothesise that this simplifies the task of modeling temporal dynamics of a video, improves the learning of long-term dependencies, and reduces error accumulation. As evidence, we demonstrate that DLH outperforms state-of-the-art benchmarks in video prediction, is able to better represent stochasticity, as well as to dynamically adjust its hierarchical and temporal structure. Our paper shows, among other things, how progress in representation learning can translate into progress in prediction tasks.

Implicit regularization is an important way to interpret neural networks. Recent theory starts to explain implicit regularization with the model of deep matrix factorization (DMF) and analyze the trajectory of discrete gradient dynamics in the optimization process. These discrete gradient dynamics are relatively small but not infinitesimal, thus fitting well with the practical implementation of neural networks. Currently, discrete gradient dynamics analysis has been successfully applied to shallow networks but encounters the difficulty of complex computation for deep networks. In this work, we introduce another discrete gradient dynamics approach to explain implicit regularization, i.e. landscape analysis. It mainly focuses on gradient regions, such as saddle points and local minima. We theoretically establish the connection between saddle point escaping (SPE) stages and the matrix rank in DMF. We prove that, for a rank-R matrix reconstruction, DMF will converge to a second-order critical point after R stages of SPE. This conclusion is further experimentally verified on a low-rank matrix reconstruction problem. This work provides a new theory to analyze implicit regularization in deep learning.

Gradient-based explanation is the cornerstone of explainable deep networks, but it has been shown to be vulnerable to adversarial attacks. However, existing works measure the explanation robustness based on $\ell_p$-norm, which can be counter-intuitive to humans, who only pay attention to the top few salient features. We propose explanation ranking thickness as a more suitable explanation robustness metric. We then present a new practical adversarial attacking goal for manipulating explanation rankings. To mitigate the ranking-based attacks while maintaining computational feasibility, we derive surrogate bounds of the thickness that involve expensive sampling and integration. We use a multi-objective approach to analyze the convergence of a gradient-based attack to confirm that the explanation robustness can be measured by the thickness metric. We conduct experiments on various network architectures and diverse datasets to prove the superiority of the proposed methods, while the widely accepted Hessian-based curvature smoothing approaches are not as robust as our method.

In this work, we introduce a hypergraph representation learning framework called Hypergraph Neural Networks (HNN) that jointly learns hyperedge embeddings along with a set of hyperedge-dependent embeddings for each node in the hypergraph. HNN derives multiple embeddings per node in the hypergraph where each embedding for a node is dependent on a specific hyperedge of that node. Notably, HNN is accurate, data-efficient, flexible with many interchangeable components, and useful for a wide range of hypergraph learning tasks. We evaluate the effectiveness of the HNN framework for hyperedge prediction and hypergraph node classification. We find that HNN achieves an overall mean gain of 7.72% and 11.37% across all baseline models and graphs for hyperedge prediction and hypergraph node classification, respectively.